PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_6AL_775D5A865.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family bHLH
Protein Properties Length: 71aa    MW: 7773.78 Da    PI: 6.5162
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_6AL_775D5A865.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH17.38.6e-061371655
                           HHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                    HLH 16 iNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                           +N+ +  Lr+l+P++   + ++ + a+i+  A++++k+L+
  Traes_6AL_775D5A865.1  1 MNEYLVVLRSLMPES---YVQRGDQASIVGGAIDFVKELE 37
                           8999***********...9******************996 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088810.404136IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.1E-9157IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.67E-11158IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000839.13E-7141No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 71 aa     Download sequence    Send to blast
MNEYLVVLRS LMPESYVQRG DQASIVGGAI DFVKELEQQL QSLEAQKRAL AHQQQQHKAG  60
RDAAPLPAGA S
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3575791e-85AK357579.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1057A06.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003572839.32e-29PREDICTED: transcription factor bHLH96
SwissprotO810374e-20BH070_ARATH; Transcription factor bHLH70
TrEMBLW5G7Z38e-45W5G7Z3_WHEAT; Uncharacterized protein
STRINGMLOC_67091.19e-35(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP111443441
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24140.18e-15bHLH family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]